Submission Results
Sequence Name: Not Available
GenBank Accession Number: NC_048661 open_in_new
Download Results: NC_048661.PHASTEST.zip
gi|00000000|ref|NC_000000| Clostridium phage CPS1, complete genome. 19089, gc%: 28.26%
Download summary as .txt file:summary.txt file_download
Total:1 prophage regions have been identified, of which 1 regions are intact, 0 regions are incomplete, and 0 regions are questionable.
| Region | Region Length | Completeness | Score | # Total Proteins | Region Position | Most Common Phage | GC % | Details |
|---|---|---|---|---|---|---|---|---|
| 1 | 18.7Kb | intact | 150 | 25 | 171-18918 info_outline | PHAGE_Clostr_CPS1_NC_048661(25) | 28.22% | Show info_outline |
Region DNA
>1 171-18918 ATGGATAATAAAAAGTTTATAGATATTTGTATTAAATCTATACAAGAATATTTATTAGAG CGTAAAGGATTTTTTGTTTTTGAAAAAGACATCTATGTTGTATGGTCTTGTAAAACACTA CAAAATAACAAGGCATTATTAAGTACAAATTTACAAGATGGTTTATATTATGAGATAACA TACAATGGTGATAAAAAAGAGGTTTATTTAGATGTATATCATAAGCAATATAATGAGTGT ATAAGATGATAAGAGGTGATTTAAAATGGAAAAACAATTCATAATGGTATTCTATGATGA TAACAAATTAATTGAAAGGGTTGGATTATATGAAAATTTAAACAATCCAAAATGGTTAAA ATGGTTGTCTAAAAAGAAGTATAAAATATTTGCAAAAGTGAATAATATTGAAGTATTCGA AATTTACAATGATTCACTATAATTTAAGGGGCTTTATGCCTCTTTTTATTGGCAATTCAG TTAACAAATTATTTACAAATAAATCAATAAAAACCTTGAAATTATAGGTATAAAATGCTA GAATTATGTTAAGAGGAAATTATACCAAAATAAAAGAGAGGTGTCAAATTTGAAAGAATA TATTGTAAAGCTTTCACTAGATGAATTAAGTACTATTGATTTATGCTTAGATACTAGAAT GGTACAAGCTAAGAGCATTGATGAACTTGAGCAACTTTACGACTTAGCTAATAAGATAAG GGGAGTGGTGGATAGTGAGGAATAAACACAACATGGGATTAGAAACTTTTCATGCTGTAG TAGTTGAACCTTTTTATTATGAGTTAAATTCTAAAAATTATAATATTGGTGATGATATAT TTGTAATTGATATTCTAGGTGATAAGTATTTTTTAGAGAGTGATGTTATAGACATCATAC CGCGCAAAAACGTTAGGAAGGTGAGAAAACATGGCAAGAAAAAGATTAACATTAAAAAGT AAGAAAAAGCAAATTGAGAAAAAGAGCTTTGAAAAGCAATTTAACAAAGCTGTAAAAAAT GGGGCTTATATCTACTTAATGGACAAGGATATTCAAAAGAAGGCTATTAAATTATTAGGA TATGATAAGTCTACACTTAACATAATAGTTGATATGGCAAGAGATACAGACTATAAAAGA AATGCTGACAGGTTTGTTAAGAACGAACAGAAAAGAAAAGAGAGAGAGAAAACAAAAGAA CGCAAAAAGATAGTCGAAAATTTAAACAAATTAGACTTAACACATGAAAGTAAACAAAAG ATTATAAGTGACACGCATTTAGGGTTATTAAAGTTTGTTGGGAAAGAAGATGCAGAAGAA AACATCAGAAAGGAATTAGTTAATAAAGTTACTGATTTATTTTTTGGTGATGGTAGTGGT AAGGGAATATTAAAAGGAGCATTTCAAAGGAATTTACCAAAGGATAAAATAGACAACTTT GTAAATGAAGTTAATAAATTTATTATGTCATCAAATGATGTTGTATCTAAAGTATCTGAT TTTTACGAAAATATAGATAAATACTTTGAGTTTATTTATGAGGAAAATATGGTTGAAAAG GGCTATTACACTCATGGAGTGCATGATGTTGAAATGGGCTATATATTAGAAGACTTATTA GCAACATTTAAAACGGGATTGAAACAATAAAACATAAGGATGTGGAATTAATGAATAAAC ATTTAACTTATGTCAACGAACATAGTTTACAAGTAACTGAATATAGTAAAATAGATAGTA AAGATTTAATATTTGATATTGAAACTTGTTACGTTGATGAAAAAATGTTAAATAAAGATT ATCCACAAAAAGACAAGAAAAGAAAAGTTTGGGCGTTTGGATTAGGTGCTACAAATACGA ATAACGTAATATTCGGTTGTGATTTAGACGAGGCTTTTTATACCTTTCAAATGATAGGGT TTGAACAAGCTAAAAAAGAAAATATAAAGAAGAATAAAAATAAGAGAGTAATAACTTTAA GTGTTGCTGTTCACAACGTTGCTTATGAAATTAGTTATATGCAATATTGGTTAACTGACA ATGGATTCACTTATGTCAATCCCAGTTTACAAACTAACGAATTAGGTATTAGTAGAACTA TTGAGAATTTTAAACCAATGACTTTTTCTATAGTACAAACTGATAATGTTTATTATGGTT TAGAAGTTAATTTACCTAATACTTTAGAACTTTCAGACAAAGACGGTCATGTTAATACTT TTAGTGTAAAGGTAAAGTTTTGGGATACTTTAAAAATAGTACCTTGTTCACTTGATAAAG CTTATAAATTTTGCAATAACTTAGATGAAATGTTTTATAAATTGAAAGAAGAGTTTAATT ATGATAAGATAAGAGAAGATAATCATATTTTAACAGATATTGAAAGGAGATATCTTTATA ACGATATCAGAATACTAAAAGAAGTTATAAATGATTATTTTTACAACTCACTTTTAAAAT TTGAATATAATGATGAAGAGATTTACATAAGTTCAAATTGTAAAACAAGTTCTTCAATAT CATTTAAATCAGCTTTAGAGATAACATATTTTGAAGACAGAAACAAGAAAAAAGCTTTTA TAAATCAATTTGAGATTGAAGAAAGACAGATGCTTTTAAGCAAAATGGCTAGGGAAATGG AGAACAAAAGTTATGAAGGTGGGTGGACATGGTACAACCCTAAAATAGTTAATAAAGTTG TAAAATGTAATGGGTCAAGCTTTGATATAAATTCAAGCTATCCATTTCAAGTTGAAAGTG CTTTATTACCTTATGGTATGCCAACTGAATACAAAGGATATGTTAAACCAGTTGAGGGTG AAGAAGTAGCAATTTATAATATAGGCTTTGATTATTTTAAACCTAAGAGTAAAGAGCATG AATTACAAATGATTAGATTAGGGGCAAAGAACTTTTCTGATACTGATTTACCTTTACTTT ATAGAGATAAATTGAATATGGTTCTTATGAATGGTAATTCTTTTATTCATACTAATATAA TAGATGGAAGAGTTATTGAAATTTATCGTAATGGTTGTGAAAATTTATGTAATTATAATA TGAGTATTACAAGTGTAGAACTTGAACATTTAACAAAATATTATGATTTTGGTTATTATG AAAATGTTGAGGTTGATGGTTTTTTATTTAAAGAAAAAGATAAGATTAAATTTAATGGTT TAAAGTTTGGTACTAGCTTAGTATATAAAGCTGAAAAAGGTATTTTTTCAAACTTTGTAA ATCACTTTTATAATTTAAAATCAGAAATAAAACATAGAATAGATAAGGGTGAAAAGTTAG ACGCTCAATATTCAGCAATAAAAACTATACTCAATTCTTTTTATGGCAAGTTTGGGACAA GAACTACTCGTACTATAGACTATTTAGTAAAAAAGGATAAAATATTTACATTCGATAGAG GGGGTAAAGAGAAAAATTTAGAAAGGGTTAAAAAGTTAAAAAATGAAAAAAGAAGAAACC AAATTTTAGCAAGTGGACAATATATTGAAACTTATGAAAGTGAACCCTTTTATAAACCAT TCGCCAGTTTTGTTACGGCATATGCTAGAGTATATCTTCAATCAATGATAATAGAAGGTT GTGGAGTTGAAAACTTTTTATACAGCGATACTGACAGCTTTTATTGTTCCATACCTAAAG AAAAAGTAATTGAAGGTTTAAAGAAAATGGGTGTAGAAGTTCACCCTAACAATTTAGGAG CTATGGATAATGAGAAAAACTTTAAAGAGTTTAAAACCATAGGGGCTAAAAAGTATATGC TTAGAACTAATGACGGTAAAATAACTTGTAAATGTGCAGGTGTTCCAAAAGATGCACAAA AGATATTATGTAATGAAGGTTTTGAAGAGTTTAAATTAGGTAAAGAAGTAAAGGGTAAAT TAGCACAAATAAAATGTGACGGTGGTCTTGATTTAGTAGAAGTCCAATATATAATAAAAG ATTTAAGTTTAAGGAGGTAACATGGGTAAGTTTTTTGAAATAAAAGAGTTTATAGAAGAA TATCCAAACCATTTAATACATTGTGTTATAGGAGCAAGGGGTGTCGGGAAATCATATTCA ACAAAAAGATTAATAATACAAGAATTTTTGGAGTATGGTAAACAAGCGTTGATATTAAGG AGATATAAAAATCAAGCTGAAAGTATGGCAACGACATACTTTACAGATGTATTACAAAAG GAATTTCCAACTGTTGAATATGAGTTAAAGGGTGATATGGGATTTATAAATGGTGAACCA TTTTGTCTATTTACGGGACTAAACGGAAATAGTTTAGCTAAGGGTTCATCATTTCCTAAT GTTTATTATATTATTTATGAAGAAGTTATGCCCGAGCCTGGTGAGAAAATTATAAAAGAT GAATATAAGAAATTAGAATCTATAATTGTAACAGTTGATAGATTTGAGGATAGAATAGAA GTAATATGTGTTGGGAATAATACAAGTTATTACAACCCCATTTTTGATACTTTAAAGTTA TACCCTAGTACAAAACCGAACAGAGTTGTCAAAAATGAGCTTATGGCAATTAAAACACTT GAAACACCTAAAGAGTTTAAAGAGTACGCCTTAAATTCTAAGGTTGGTAAATTAACCGTA ATGAGTGGTTCATCACGCTATAATATAGATAATGAAAATATCAGTAATGATAGATTTAAC GTTTGTAGTAAAAAAGAATTATGGGATACTGATAAACTAGAACCAGTTTTTAAGGTTCGT GTAGATGTGGACAAGGTAATTAAAATATGGAAGTGTCAAAGCGACACAATGTTTTACTAT TGGGTTGATAATCATAATAAAGGTAAATGTGACGAATACTTTTTAGATTTAGATTACCAA ACAGACGAAAATAAGCATATATCTTTATGTAATAAAGGACTTATAAATAGAATCAATTTT AATAATAAAGTTGGTGCTGTTTTCTTTAATAATGCTGAAACAAAATTTTACTTCAATCAA ATTGGATTATTTTTTAAAAAATAATGCAAAAAAGTGTTGACATAATATATAAATGTAATG TATAATTAACTCATAAGGAAAAACAAACCAAAACAACAAAAATATTTAAAATTAAAGGAG AGATTTAACATGAAAAAATTATCAATTTTCAATTTAGGAAACAACGTTTCAAGTGGGGTA TATTTTAGATTAAAGGATAACAGAGAAAAGGCTGTTATAACTTTCTTAATCAATAACATT GATGAGGTTGAATTAGATTTAGTTCACCCAGTAAAATTAGCAGATGGTAGAGAAATAAAT GTAAAGTGTGTGGCTGAATTAGACAATGACTTAAAAGTAATCAAAGATACTTGTCCTCTA TGCGGTGAAGGTTTCAAGATGTCAGAAAAGGTTGCTGTTAATGTTTATAACCATACTACT AAGAGTGTACAAATTTGGCAACTAGGCAAGACTTTAATAGAAAAATTAATTTTCTTAGCT GAAAAAAGACCAGACCTTATTAACCATACTTATGAGGTAACAAGACTAGGTGCTAAGGGT GATACTAATACGTCATATGAATTTGAGTATTTAGGTGCATCAGATAAGAAAGTATTTGAA GGTTTAGATTTAATCAAGAAAAACGAAACAGTATATTATGAAGTATCAAATAAAGACTTA GAAAACTTCTTAATTACTGGTGATGAAAAAATATTTGAAAGAAATAAATAATTTAAAGGT GGGTTAATTCCCACCTACTAAAATTAATATAGAGGTGAATAAAAATGGGAGAAAATAGAG AGTTAACAGAATTAGAAATCAGAAAGGAATTAGCTTTAGAAAAAGTTAATGAAAAGAGAT TACAACTTAATAGAGTAGTTTCTTTTATAAATCAAGAAGAAAAAGAGTTTCCAAAATCTA AAGAGCATGATGCTGTAATGTTTGATACGCTTTTAACTTCTTTAGGAATAGAATTTAAAG TAACAGAAACTAAAAAGAGAATAATATTTCAATTAGCATAACGTAAAATATACCCCCTTA CTTAGCTATATAACGTAAATGATTAGGAAGTCACACGGTAGAACGTGCCTAACATTTTTC CACCTATGACCGTGGGCGTTGTATAGTGAAGTAAGGGGGTATAATATTTTGTAAGGAGGT TTTAAAAATGAGTAAAGAAATGACTCTTGATGATGCCCTTTTAAGAATTGTTGAATTAGA AGAAACTATAGAAAATCAGAATAATGTAATCTGCACATTAAATTCTGAAAAGGAAACTAA TTCAAAAGAAATTGAGAAACTTCAAAAAAGTAACATGGAATTATTCCTTAAAGTTACTAG CAAACCAAAGGAAGAAAATAATACTGAAATTAAAGAAAATAACGAGTCAAAAATGGACAA GCTATTAAAAGAATGGGAGTGATAAAATGGCTGTTAAGGCAAACAAGGAAATTATGGAGG CTTTTTTAGAAGGTGCAACAGAGGAAACTAAAAAGGTTTTAAGTCAAGTAGATTTAGCTG ACAGTAGAGCTGTATCAAACGCTTTATTCAATTATCAAGTTGTGAAAAATGAGTTTATAA ACACTTTAATAAATAAAATATTCATGACTCAAATTCATTCTAAAGTATGGAAAAATCCAT TAAAAATATTTCATGGTGGTATGGAAGAATACGGATATACTATAGAGGATATGTATGTAG AGGCATCACAAAAAGTTGGCTTTAAAGAACATTTTAACGGTGGTGATGATGTAAAGGATA TAGTTGGTTCTTTAGTTCCTAAAGTTTACACTAATTACCTTTCAAGAAACTTTGCTGACA AATATAAAATAACTATTTCAGATGTTCAATTAAAAACAGCGTTTAGAAATGAATACGGGT TATCTAATTTAGTTAATAAATTATTAGAGGCAAATTTAAGAGGAGCTTATCGTGATGAAT ATAAATATATGAAAAATATGTTTTTCAAATATTGTAGTGGATTAAGCAATCAAGATGTTG GTTTAAGTGGGTCAGCTACACAAACACAATATATTCAAGACTCCCAAGTTATTAAATTAA ATGATGATGCTAGTCTTGTAAAAAATCTTTGTAAATCATTAAAAGCTATGAATGACAGAC TACAATTTGAAAGTGATAAATATAATAGCGCTAAAGTAATGCAATTTTCATCTTTAAATG ATTGTGTATTTATAACAACGCCGGAAATGAAAGCTGAAATAGATGTTGATTATTTAGCAG ATGTTTTTAACCTTTCAAAATCAGAGGTACAACAAAGAATTATACTAATGGACGAACTAC CAACAACTATTAAGAGTGGTGATACTGGGACTAACACTCATAGTGGTGAAACTTGTATTG GAATGTTAGTTGATAAAGACCTTCTAAGATTTAAAGATTTTGTATTTGAAACAAGATATT TTAATAACCCAAACAACTTATCTACTAACTACTTCTTACACAAACAGGGATTATGCGGTA TAGTACCATTTTTAAATGCCATAATATACACTAAATCAACAGAATAGGAAGTGTGATAAA TGGAAAAGTTAACTAATAAGGAAATTTACGATAAATTAATTTCAACCATGCCCAAGGATT TGGGCAACTCTTTTCCTTCTTATGAAGAGGCTTTAAGGTTGAATTTAATAAATATTGATA TGAATAGTTTTATCGAAACTATATGCAATAAAATAGGAAAAATGTTATATATAGAACAAC ATTTTTCAAACCCTTTCAATGAGCTTTTTTATGGTGAAATGCCATTCGGTTATTCAATAG AAGAGTTATTTTTAGAAGACTCAACTGTTCAATCATTATTAGATGGTGATGAAAATGAAG TTTTCAACTCTTCTTTACCAAGACTAAACGGATTAGTTGCAAATAGTAGATTTGACAAAA AAGTTAAAATGACTCTTAGTGTTGAAAGATTAAAGTCAGCATTTTTAAAAGAGTTTGGTC TATATGATTTAATATCTAAAATGTTATCTAATTTAAAAACTTCTATGAGTAAAGATAAAT ACAAAGAAATAGAAAAAGCTTTAAAGGAATTTGCTAAGGGTTTAGACTCTAACGGAGAAA ATCTTAATTTTAAACAAGTTCCATATAAAGAAGTTGCAAGTACAAACTTAATTGAGAGTA TTGTAAAAATTGTAGAAGAATTTACTTTGCCGAGTGATAAATATAATCCTAGCAAATTTA ATACACAATGTTTAAAAAGCGACATAATAATATTTGTGAAACCTGAAATTTATGCAAAGC TAGTAAGTACAGATAGCGTACTTTTAAGAGGTGAATACAATATCAAGTCAATTAGTGATT TACCAACTGATATCACTAATTTATCAACGAATGATACAATTAATCCAGTAGCGTTAATTA TGGATAAAAGATTAATGCCTATAATGTTGAATTACAACGGATTAGATAGAATTGACGACC CTAATAGTTTAACAACAAATTATTACTACTATGAAAATTATAGTCTACCAGTAAATACTT TTTCTAATTTTGCAATTCTAACAAGTGAATAAAAACGTATATTTTTATTCTTTACCTTAT GTTGATCCATCATATCAGAACCTTTTTAACTTTAAAAGTATAGGTATTCAAAATGATTAC TTTTCTTCTAAAGTGGTATGGGTGGGTCAATATAACATAAAGGTAGAGCCTTCCCGTGTA AGCTTAGTGGTAGACAAGCCTTACGGTTGGTTTATGGAGAATAATATTAATTATATTTCA GCTTATGATACTAACATGAAAAATATTTATTATTTTATAGACGACTTTGTTTATAAAACA GAAAATTCTACTCTTTTAGTAATATCCGTTGATGTATTCCAAACCTATCAATTTGACTTT GAAATTTTAGAAAGTTTTGTTGATAGATGTCACGTTAATAGATGGAACGGTGATAACCCA ACGAATGAATATGAAACCGAGGATATTTCATACGGTGAAAATGTTATGCTCGAATATGAA AAAATAGCTGATATGGGTCGTGGTGTTGTTGTCACTTCTACAGTACCACTAGGAAAAGTT GAAACAAACGTTGGAGGTGGTTCTGATGGAACTGGTTCAGCAAGTGGTGATATAGCAAAT GGTATTATATCAGCAAATGGACTTTTATTTGTAAAACAGGAAGAAGGTTTTGCAGAATAT GGAGCATATTTTAATGGAGAATCTTTTAAAACTGGGGGATATGGTGTAACTGAAAATTAT CAAACTAAATATTATAGACAACTAGAACCATTCCCAGTATCAGAGGAAAAAGCTAGTCAA GTTACTTATGATTTATTAAATAATGAGTTTGGAATACCAGTTAAAAATGCTATGTTAAAA GCTAATATAAATTTAAGTGATATCCCTATATATCAATTTGATGTTTGGGTATCAATAGCA TTTAACTATGGAATGGGTGGTTTAAGTGGATTAAATGCGTGGCAAATGTTTTTAGCTAAT CCAAAAGATACGAAAAATATTGCAACAGCAATAAAAAATTTAAAAGCAAATCCAAATAGA AGGCAGAGAGAGGGAGCATTATTTGAAAGTGGTGTTTATCCTCAAAGACAAATTTTAAAG TATGGACAAAATGGTCAAATAGTTGGATATACAGATGGTAAGGGTTGGTTGCCTAGTGGT AAAAAAGACGGTAAATATGTTGATAATGATGCTGGGACAAACTGGTTAATACCAACAACT GGACAAATAAGTGCATATTACCCAACTTATCCAAGTAACAACCCTCATAATGGTGTTGAT ATTGCAACCCCAACTGGTACACCAGTATATGCAAGTAAAGACGGAACTGTCATTAAAAGA AGAGAATTAACTACTAGCTATGGAAAATTTTTAATTATACAGCATGGTGACTCACAAGTT GTTTACGCTCATAATTCAGAGTTAAAAGTAAATGAAGGTGACACAGTAAAACAAGGACAA TTAATTGCACTAAGTGGAAATACTGGTAATAGTAGTGGTGACCATTTACATTGGGAGATT AGAAATGAAAAGGGAACAGTTGTTGCAAATGGTGTTAAAACTGTTAATCCTATGCCAAAT TATAAGGTAGGTGACAAAGTATGACAATAACTAATAAAGATTATGATACGTGGGATTCAA AAATGTATGGTTTACCATATGCCGTTTATAGTTATTATATTGACTCTACCGTGGCGGGTG AAAATACAGCTGTCATTGGTGCAAGTGGTGACAATGTTTTTAGTGTTGTTTACACACCAT TTCTTGATATTGCTGATTTAGAATTAGAAGAGATACCATATGACAATAAAAGATTTGGTA ATATTTCTGAAATTAGACCCGAGATTAAAGCAAATCCACACGTTTTCAGAATTAAAAAAT TATTGAAAGGTTCAAAGTTTGTTGGTGAGTTTGAAACTTACAAGGTAAAAAAGAGTGTTG GTGGTAAAAGAAATTGGAGAAATGAGAGTAAATTATATAATTATCCATACACTTATTTAA TGCTATCTGATGGTATAAACGACCCTATGGTTTTAAAGCCCCAATTTTGTTCAATTCCTA GTTGTTCAGTTGGTATAAAATTATCTGTTTCAGACCGTTGTTCATATGGTATATTTGTAC AAACTTATAAGGGTGATACAGACGGAATGACAGAGGCTTTGGTATCAAATGATGCACTTG AATTGCCTTGCTCAAGTTCAGCATATGCAAATTGGGTTGCAACTTCAAAAAATCAGACAG CACAATCAATTCAAAATACTGTAAATCAAACTATTTTAAATGATAAAATAGCAAAAAATA ACATGAATTTAGGTATCGCAAATAGTGTTGTTGGTGGTGTTGCAAGTGCATTTACTGGTA ATGTTGGGGGTGTAATAGATAGTGTCTTTGGTAGTGTTGGCTCATATATGGATAAAAAAC ATACGAATATGCAGAGTCAATTAACTAGGGAATCAGCTATCAGTTCAGCTTTAGCTACAG CAAATGATATGAGGACAACACCTAATACTTTACTTAGTCAAGGGTCAAATATAATTTATG GTTTACGAAATGGTGGACAAGAATTAAGACTTTATAGATATGGATTAACCGAAAGATATT ATGAAAAAATAGGAGATTATTTTGCTCAATTTGGATATAAGCAAAATAAAATGATGAAAA TTAATATTAATTCAAGATATTATTATAACTATATAAAAACAATAGGAATTAATATAAAAA CTAATAAAATTCCTAATAATTACTTAAATATCCTTAAAGGTATTTTTGACAATGGTACTA CAATATGGCATATTGATAATGACGGTGTCGAAATTGGTAATTATTCTATGGATAACAGGG AGGTATAAACAATGAAAATAGGTATTAGAGATGGACATAGTCCTAATTGCAAGGGAGCTA TTGCTTTAAGAGATGAACAAGCTTGTATGAGAATTTTATGTAGAGAGGTTATTGAAGTAC TAGAAAAACATGGTCATGAGGTAGTTTATTGTGGTTCTAATGCTAGAACAGAAAATGGTG AGTTAAGTGAGGGTATAAATAAAGCTAATTCCAATAACGTTGATATATTTATCTCACTTC ATATGGACGTTTCAAAAGAACATAAAGCTAATGGAACGTGTTCATTTGTAGCAAAAGAGG CAAGGAAATCAATAAGAGATATTGCACAAAGATTAGTCGATAACTTTGAAACTTTAGGTT TACAAAATAGAGGTGTAAGAGAGAGTAATTATAGAGAAATGAGAGAGGTTAATGCACCTA ACATAATATTTGAAACCATGTTTTGTGATAACCTTCACGACATAAATGAAGTGTGGTCAC CTACACCATACGAAAAAATGGCGTTACTAATTGCAAATGCTATTGACCCAACTATCAAAG AAAATGAACTTTATAGGGTTGTTGTACAATATTTTAACAGCAAAGAAGATGCCGAAAACT GTCAGCAAGAAATTGCTAAAAGATGGTATTGTTTTGTGGAGGGGTGTAATTAATGCAAGA AATAATAAATATAATAAATAGCGTTGGGTTTCCAATAGTTGCGTGTATGATAATGTTTAA TCAGAATAGTAAACTATCAAATGCAATTTCAGAACTTAACATAACATTAACAAAAATACA ATCAGATATTGACAGCTTAAAGTATAATCAAAAACAAGGGGAATAAATTTCCCCTTTTAA AAAGGTGGTGGTTAGATGGGAAAAAGAAAATCTATAATATCTCAAAATCCTAACATTTTA CTTAATGAAAATACAATATGTGACAATCAAACAAGGTTGTTTTTACATTATAAACTTATG GCTTGTAATAGGTTTAAGTGGGAGAACTTACCGACTGGATTAGAAAGTAGACATATTGAG GACTTTTTATTTGAAAATGGACAATGTTTTTTCTTTAAAGATGATAAATTGGGTTTAATG TGTTTACCGTGCCATGGTTTGGGTGATTTAAATATCTATGGTGATAATATCAAATTAAGC ATAGTTTCAAGAAATGGCAAATATCAAAACATCTTAGAAGATGTTAAAGATGGTGTAAAA ATAAGAGCGAATGACTTATGTTTACCAACCTCTCATTTTATTTCACATTATGCCCAAAAA ATGGACGATATAGAAACAGTAATAAAAAGAAATTTAAAGCAACAAATGAAACCTTTTTTT GTTACAGCAACAAATAATAATTTATTGTCAGTAAAAAATATTGTAAATGATGTTGACAAT GGGAAAGAGGTTGTTATCTTAGATAAAGATTTAGGAGAACAGGGGTTTGACGGTTTCAAG ATGCTACAAACTGGCGTTATTTACTTAGTTGATAAATTAGAAGACGAAAGAAAAGCGGTC GAAAGTGAACTACTTTCATTTTTGGGTTTAGATAATGCTAATACAGAAAAAAGAGAGCGA CTTCTAGTTGATGAAGTTAACGCTAATAATGAATACATTGAAACAAATTTAGACATGGAA TATAAAACTAGGTTATTAGCTTGTAAAATGATAAATGAAAAATTCGGAACTAACATAAAA GTAACTAAGGTTGTTGATAGCTTTGGAGGTGATGAAAATGGCTAAGTACACACTAGAGTT GAGGACATTGGAGAATAATTTATTTGACTTTGATTATCCCTACTATGAAGAAGAGGCAAA ATGTTACTTTGAAGAAAAATTTATAAATCATTATTACTTTCATGAAATAGGATTTGAAAC TATAGCAAGGTTTAAACAACAATTAAAAGCATATTTTTTGAGAGTTATGCCATATTATCA GCAACTTTATGAAATAGAATTAAGATGTAAAGATATTGACTTTATGTTAAATAAGGATTT AAAAGAAACTTTTATTAGGGAACTAGAAGAGAATGAAATAAATAATTTACTAACATCACA AAATGAAGTTGGTAACACTTCTACAAATATAAATAATAATGAAAGTAATAACTCAAATAA TAATACTAAAGAAAGTTCACTTGCCGATGGTGTATCGAGTTCAAAAATTGCTGACGGATA TTTAACAAATTCAAGTCAATCTACAGATGTTTATGATAGTAATAGTAGTACAATAAGTAA AACAGATAATAAGAGTAATTTAAATATAAATAATACTGGTGATAAAAACAACAAACAAAA AGAGAAAACAGAATTAATTTCCCAAGGTAATATTGGAATAACTTCATCAGCAGAATTAAA AGAGAAATGGCAAAGTTGCTTAAATAACATAGATGAACAAATTATATTAGGGGCTAGAAG TTTATTTATGTATGTTTATTAGGTGGTGAAATGATGATTATAATTGATAGAAATAAAATA ATTGTTAATCAGTTTGATTTATGTATCTTAGATTTAAAACTATGTGAGTACAATCTAAAG GAAGGTGACAAAATAGAAATAAATATTGATGGTGAAATAACAGAACAAAATTATGATAAC TTAGATGTTCAATTCGATACAGATATTAAGGGAATATTTGATTACTCTATAACAATTATT CAACAAGGTTTTGCAAGAACTAAAGTAATACAAAATAAAATTGAGGTGATATAATGGCAA GGTTAAATTATAAGGAAGTTTTAAAGGGTGATGTTGGGGCGACATATGAACCACACCTAA CTGATGAAAGTGTTTTGTATTGGACTAATAACGGTGGACTAGAAAATCCAACACCTAAAA ATATTCGTGGAAAAACAGGAGTAACACCTAATCTACAAATTGGCACAGTTGAAACTCTAG AAAGTGATGAAAATGCAAAAGTTGAAATTGTAGGAACAGCTGAAAACCCAATTATAAATA TGGGCATACCAAAAGGAAAAGAGCAGGACTTAAATCCTTATCAAACTAAAAATGATGATG AACTTTTAAATGATAAATCAATAGTTGAAAATATAAACAATAATATTGTTTATAATAAGA ATAATCAAACTGATTTTAATACCATAGTTAATAAAAAAACTAATAAGTTAAATACAGATT TTGAAGATGACACATATTACGATAAAAATGGCACCAAATATTCTTATAGTGGTTATACTG TTTTATCAGCAAAAGTTGAACCTTTAAAACAATATGATATAAGTTGTTATTCTAAATTTT CTATGTCACCTATAACATTATGGAATGATGAAAATTTTATTGGCTACATGGGTGAATTAA ATCCTAGTGGTGAAAGTGGTTTAGAAAATCAAAATATAATAATTACAACACCTATTAACT GTAATAAGATAAAAATACAATCAACAAATTGGGGAAAAACAGATAAACATTATATAAAAG AATTTATATATTATCCTAATACTTTTAAATATTTAAAAAATTTGAAATGGGGCGCAATAG GCGATAGCTTAACAGATGCTAACACACTAAAAGAACAGACTGTAAAAGAAAATTATGTTA ACTATGTTAGTGAAAGTTTAGGTTTAAGAGTTGATAACTTAGGTGTGGGTGGAACTGGTT ATTGGAATGGAAAAAATATTAATAAAAATTTCCCTAAAAGAACAGAAAATTTAAATAGTG ATTATGACATAATAACTATTTTTGGTAGTTTTAATGATAATTTTGAAACAACAAATTATA CGTTAGGGAATGTTAGTGATAAAACAGAGGAAACTCTTTTTGGTTGTATGAATAAAACGC TAGGAAATATATATAAAAATAACCCTAACGTTATCGTTGGTATTATTTTACCTACGCCTT GGGGTGGTTGGAATCTAAGACACCCTTCAAGACTAGAAAAATGTAAGGAATATATTAATG CTTTAATTGAATTTGCTAATTATAATTCATTACCCATTTTAGATTTATTTCATGAAAGTA ATTTGCGACCTTGGGATAGTGGATTTAATTCAAAATATTTCCTAAATGCTGACACTGTTC ACCCTTTAAGTGAGGCTCACAAGAAATTTATATCACCTAAAGTTGAGGACTTTATTATAA AGTTAATTGGAGGTAAAAAATATGATAAATAAATTAAATCCTATTGACCTTAATTGTAGT ATATTTACAGTTTACGATTATACAGGGTTATCTATGCAAGAAATTTTATGTCAATTCTTT AGTAAAATAAATGAATTAATTGACTCACAAAATCAAGTAATAGATTTAACAAAATGGTTA GTAGGTCAAGGCTTAAAAGAAGAGGTAGCTAAACAGCTTAATCAATGGTTAATTGACGGT ACTTTAGCTAACATAATAAATGAAACAGTATTTAGGGATTTAAATAATAAAATTAACTCT AATATAGAAAATATTAAAAACAACAAAAAAGAAATAGATAAACTAGTAACAGTTTGGAAT AATCTTAAATGTTTTAATGTTGTTGATTTTGGAGCAATAGGTGACGGTGAAACCAACAAC AATAAAGCCTTTGAAAATGCTATAAATTCATGTGTTGAAAACAATGTTCGTGGTTTGTTA ATTCCTACTGGTAAATTTTATATTACAGAGGGTATTAATACAAAGGGTGTTAAAATTATA GGTATGGGTGACCCTTATATTCCATTTTTAGAATGGGAATATACTAGACCAAACTCAAAA TTAGACGAATATAAAAAATATTTAAATAAATGTAGAGGTAGTATAATAACATCAGATAAA AATATTAATATATTTACTAATGGTTTATATGCTGAAAATATAGGTATTTTTGGTAATAGA AGAGCATTATCTCAAAATGGTGTAGGTCAAATGGACGGTGGTTTTGGTAACTGGATTGAA ATAGAAAAGGTTAAAATACATGGTTGTGGTAATTGTGGTATTAATGCTGAATACGGGTTA ATAACACCTATAATAAATCAATGTTGGTTGTATCAAAATGGTAACAATGGTATAAGAATT GAAAAAAACAAAGGAACTTACACAGGAGAAACAAACGCTTTAATAATAGAAAAATGTTTT ATTAATAGAAATGAAAGCCATGGTATTTACTTAGATGTTAAAGGTAGAGCATATACTATT AAAAATAATGACTTAGAGCAAAATGGTGAAATGAGTGACCCATTGAGAAATAATAAAGGT ACTGATTATAATGATATAGTTTATGGTTGTTATATGAAGGTTGAGGGTGAAGGTGGTTTC ACTAGTGGGTCAATAGATTTTAGTAATAACTATTCAGAAGAAACCCTAGGTTTATTATAC TTAGAAAGTCCTGATAATAAAATATGTCAAGGTGTAAAATTTGAATCCAATATGTGGCGA CCTTATAATCAAGAATTATATTCAAATGGGTTATTATTAAAAGGTTGGATTGAAGGCGTT AAAATTGGTAATAATAATATGTATGGTAGACATAAAGTAAGAATTATCAATGCAAATACC TATGGTATAGAAACTGACACAGATATAACAAACCCAGTATATAAAAATAAAAATATATCT ATTGAAAAACATTATGACTATAACGGTACAATGGTTGACTTTAGAAATACAGGAAGAGTT GAAAAATATTCTATTGAAAATATGATACAATCAGCATCTTATGATGGTAGCACTTATACC AACGTATATTTAAATAAACCTAGCGTACCTTATGAATTACAAGAGGACGGACAAGGTAAT AAATTAATTGGTACAACATTCTTGACAGCAGATGGTACAAGTATTGGTTTAGTTGTTGAC TTTTCATGGACTCATGGGTTATTTAAGATAAGAAAAGATAGAACATCATTAATAAAAACT GGTAATGCAAAGTTTATGGGGAATGGTGGTTTCACAACAATAAATGGTGGTAATACGCCA GTAAAAATCTATGTTGACCATGACAACGAAATAGTAATTTTATAAAAGAAAAGAGGGTTT ATTTACCCTCTTTTTTATCATTGATGTCGACCAATAAATCGTTACAAAAATCTAACTTTC TTCTATACAAATCCATCATAGAAGAAGTGTCAGAGAAATTTGAGAAAAACATTTCCTCAT GTGTTATTCTTTTTTCTAACTCATCTATTTTTATTTTTAAAACGATATTTAATTTATCAA TCATATACATACGTTCTTTAATATTATTAACTAAAATATTTCTAGTCCTTGATTTTTTAA TAATAAACTTTAAGCAATCAAATAAATATCTTTCACTATAATTTTCAATTAATGTATTAT GTTTAATCTCAAAATCAATTATTTTTTCCAATTCTTTTAATTTCATTTTTTAATCACCTC TTATCTCTTCAATATCAATTAATCTTTGCACTATTCTTGCTATAGGTAATAATGATGGAA TAGCCTCACCTAATTCCTTTGTGCATCTACTTTCAAGTGAACACTCTTTACAATACATTG ACTTCTTACATTCATATTTATATTTCTTTGCCTTTTCTAAATAATCCATAATATCACCAC CTTAATATAATATACAGCTTAAAAACAATTACAAATAATAAGCTTGATATAATGAAAATT GAACTTGATTAAAAATGTGTTAGTTATATAAAACATAAATGATAATACCAACTAATATTC CCATTATAATGACTAGTATTAATTGAATTAGTTTTTTAATCAATTTTGTCACCTCTTTAC ATAATATAAATAACCTAAAACGAATAAATTAAATAGTAACCAGTAACATATTATTTTTAA CACTTTATCACCTCTTTAAAGGAAGGTGGACTATGCCACCTTGAAATTATGAAACCCAAT TGACTAATCTATAATCTATTTTCATTAAACTATGATATGATGTTCTTTTTGTTGTTTTTA AGTATTTGACTTTTAAAAAATCTCTAAAAATTACACCAGTCTTTTCAACTTCTATACAAG CAACATCACCGTAAAGTGAAACACCATTTTTAAGATATATGTTAATTGATGTTATTCCCC TATCTTTCTTTTCTTGTATTAATCTTTCAAATCTTAATTTGATGTTTTTCTTTTCAGCAC ATAACATTCTTAATGTTACTATAAATTGACCTCTATAATCTCCACCGTAAGCACTTATAA ATTGTCTAGTTAATGCATGTGCAGACTCAAAAACTTTTTTCATAATAATTACCACCTTTT CATTCTTTTTGTTTGTTTTGTATTTTGGTTTGTTTTGTTTGTTCCTTATGACTATATTAT AGCAAATTATGTTAAGCTATTCAATGCTTTTTATAAAATATGTTTGTAAACAATTTGTTA ACTAGAATGGCAATAAAAAGAGCCATGATAGGCTCTATTTTATATTAAATCATCATATAA TATTATAAACATTTTGTGATTTATTATCATAATCAACTTTTTTAACCGCATACTCTTTAT CGTGTAATTCTTTAAGATGTATATTAACAGCCTCTTCACGTTCAACACAACTTAAATTCA TAGTTGCTACTATTTTTATTTGCCTCAT
Region Details
| Completeness (score) | intact(150) |
| Most Common Phage Name (# hit genes count) | PHAGE_Clostr_CPS1_NC_048661(25) PHAGE_Clostr_phi24R_NC_019523(21) PHAGE_Clostr_CPD2_NC_048738(20) PHAGE_Clostr_CpV1_NC_048629(11) PHAGE_Clostr_susfortuna_NC_048712(4) PHAGE_Clostr_CPS2_NC_048707(2) PHAGE_Clostr_phiCPV4_NC_018083(2) PHAGE_Staphy_SPbeta_like_NC_029119(1) PHAGE_Staphy_S25_4_NC_022918(1) PHAGE_Clostr_phiCP7R_NC_017980(1) PHAGE_Entero_vB_IME197_NC_028671(1) PHAGE_Staphy_phiSA012_NC_023573(1) PHAGE_Clostr_phiZP2_NC_018084(1) PHAGE_Lactob_Lb338_1_NC_012530(1) PHAGE_Clostr_phiCP39_O_NC_011318(1) PHAGE_Lactob_P1_NC_047764(1) PHAGE_Strept_Dp_1_NC_015274(1) PHAGE_Clostr_phiCP34O_NC_019508(1) PHAGE_Clostr_phi8074_B1_NC_019924(1) |
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Specific Keyword: | The specific phage-related keyword(s) found in protein name(s) in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| # tRNA + rRNA + tmRNA: | The number of tRNA, rRNA and tmRNA genes present in the region. |
| # Total Proteins: | The number of ORFs present in the region. |
| # Phage Hit Proteins: | The number of proteins in the region with matches in the phage protein database. |
| # Hypothetical Proteins: | The number of hypothetical proteins in the region without a match in the database. |
| Phage + Hypothetical Protein %: | The combined percentage of phage proteins and hypothetical proteins in the region. |
| # Bacterial Proteins: | The number of proteins in the region with matches in the nrfilt database. |
| Attachment Site: | The putative phage attachment site. |
| # Phage Species: | The number of different phages that have similar proteins to those in the region. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| First Most Common Phage #: | The highest number of proteins in a phage most similar to those in the region. |
| First Most Common Phage %: | The percentage of proteins in # Phage Hit Proteins that are most similar to the Most Common Phage proteins. |
| GC %: | The percentage of GC nucleotides of the region. |
Intact (score > 90)
Questionable (score 70-90)
Incomplete (score < 70)
Questionable (score 70-90)
Incomplete (score < 70)
| Region: | The number assigned to the region. |
| Region Length: | The length of the sequence of that region (in bp). |
| Completeness: | A prediction of whether the region contains a intact or incomplete prophage based on the above criteria. |
| Score: | The score of the region based on the above criteria. |
| # Total Proteins: | The number of ORFs present in the region. |
| Region Position: | The start and end positions of the region on the bacterial chromosome. |
| Most Common Phage: | The phage(s) with the highest number of proteins most similar to those in the region. |
| GC %: | The percentage of GC nucleotides of the region. |
Criteria for scoring prophage regions (as intact, questionable, or incomplete):
Method 1:
- If the number of certain phage organism in this table is more than or equal to 100% of the total number of CDS of the region, the region is marked with total score 150. If less than 100%, method 2 and 3 will be used.
- If the number of certain phage organism in this table is more than 50% of the total number of CDS of the region, that phage organism is considered as the major potential phage for that region; the percentage of the total number of that phage organism in this table in the total number of proteins of the region is calculated and then multipled by 100; the percentage of the length of that phage organism in this table in the length of the region is calculated and then multipled by 50 (phage head's encapsulation capability is considered).
- If any of the specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin') are present, the score will be increased by 10 for each keyword found.
- If the size of the region is greater than 30 Kb, the score will be increased by 10.
- If there are at least 40 proteins in the region, the score will be increased by 10.
- If all of the phage-related proteins and hypothetical proteins constitute more than 70% of the total number of proteins in the region, the score will be increased by 10.
If the region's total score is less than 70, it is marked as incomplete; if between 70 to 90, it is marked as questionable; if greater than 90, it is marked as intact.
gi|00000000|ref|NC_048661.1| Clostridium phage CPS1, complete genome. 19089, gc%: 28.26%
Download details as .txt file:detail.txt file_download
Hypothetical protein
Phage-like protein
Head protein
Membrane protein
Fiber protein
Collar protein
intact
Region 1, total 25 CDS| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|---|---|---|---|
| 1 | 171..419 | PP_00001;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 6.81e-54 | Show info_outline |
| 2 | 436..612 | PP_00002;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 3.05e-34 | Show info_outline |
| 3 | 760..915 | PP_00003;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 1.33e-28 | Show info_outline |
| 4 | 923..1132 | PP_00004;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 1.77e-42 | Show info_outline |
| 5 | 1101..1820 | PP_00005;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 8.92e-170 | Show info_outline |
| 6 | 1841..4150 | PP_00006;DNA polymerase;phage;PHAGE_Clostr_CPS1_NC_048661 | 0.0 | Show info_outline |
| 7 | 4152..5174 | PP_00007;DNA encapsidation protein;phage;PHAGE_Clostr_phi24R_NC_019523 | 0.0 | Show info_outline |
| 8 | 5280..5861 | PP_00008;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 4.55e-138 | Show info_outline |
| 9 | 5915..6151 | PP_00009;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 1.52e-48 | Show info_outline |
| 10 | 6298..6552 | PP_00010;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 8.44e-50 | Show info_outline |
| 11 | 6557..7657 | PP_00011;major capsid protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 0.0 | Show info_outline |
| 12 | 7670..8662 | PP_00012;capsid and scaffold protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 0.0 | Show info_outline |
| 13 | 8655..10214 | PP_00013;membrane protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 0.0 | Show info_outline |
| 14 | 10211..11458 | PP_00014;tail fibers protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 0.0 | Show info_outline |
| 15 | 11462..12103 | PP_00015;N-acetylmuramoyl-L-alanine amidase;phage;PHAGE_Clostr_CPS1_NC_048661 | 2.23e-158 | Show info_outline |
| 16 | 12103..12276 | PP_00016;hypothetical protein;phage;PHAGE_Clostr_CPD2_NC_048738 | 1.64e-33 | Show info_outline |
| 17 | 12306..13175 | PP_00017;collar protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 0.0 | Show info_outline |
| 18 | 13168..13872 | PP_00018;collar protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 3.21e-169 | Show info_outline |
| 19 | 13884..14144 | PP_00019;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 4.75e-53 | Show info_outline |
| 20 | 14144..15562 | PP_00020;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 0.0 | Show info_outline |
| 21 | 15552..17375 | PP_00021;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 0.0 | Show info_outline |
| 22 | 17389..17736 | PP_00022;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 9.14e-75 | Show info_outline |
| 23 | 17740..17919 | PP_00023;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 4.52e-35 | Show info_outline |
| 24 | 18217..18573 | PP_00024;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 4.79e-82 | Show info_outline |
| 25 | 18763..18918 | PP_00025;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661 | 1.06e-29 | Show info_outline |
Sequence
>171..419, strand: +, evalue: 6.81e-54, region: 1, locus tag: H3026_gp01, type: Hypothetical_protein, description: PP_00001;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MDNKKFIDICIKSIQEYLLERKGFFVFEKDIYVVWSCKTLQNNKALLSTNLQDGLYYEITYNGDKKEVYLDVYHKQYNECIR
Sequence
>436..612, strand: +, evalue: 3.05e-34, region: 1, locus tag: H3026_gp02, type: Hypothetical_protein, description: PP_00002;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MEKQFIMVFYDDNKLIERVGLYENLNNPKWLKWLSKKKYKIFAKVNNIEVFEIYNDSL
Sequence
>760..915, strand: +, evalue: 1.33e-28, region: 1, locus tag: H3026_gp03, type: Hypothetical_protein, description: PP_00003;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MKEYIVKLSLDELSTIDLCLDTRMVQAKSIDELEQLYDLANKIRGVVDSEE
Sequence
>923..1132, strand: +, evalue: 1.77e-42, region: 1, locus tag: H3026_gp04, type: Hypothetical_protein, description: PP_00004;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MGLETFHAVVVEPFYYELNSKNYNIGDDIFVIDILGDKYFLESDVIDIIPRKNVRKVRKHGKKKINIKK
Sequence
>1101..1820, strand: +, evalue: 8.92e-170, region: 1, locus tag: H3026_gp05, type: Hypothetical_protein, description: PP_00005;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MARKRLTLKSKKKQIEKKSFEKQFNKAVKNGAYIYLMDKDIQKKAIKLLGYDKSTLNIIVDMARDTDYKRNADRFVKNEQKRKEREKTKERKKIVENLNKLDLTHESKQKIISDTHLGLLKFVGKEDAEENIRKELVNKVTDLFFGDGSGKGILKGAFQRNLPKDKIDNFVNEVNKFIMSSNDVVSKVSDFYENIDKYFEFIYEENMVEKGYYTHGVHDVEMGYILEDLLATFKTGLKQ
Sequence
>1841..4150, strand: +, evalue: 0.0, region: 1, locus tag: H3026_gp06, type: Phage-like_protein, description: PP_00006;DNA polymerase;phage;PHAGE_Clostr_CPS1_NC_048661
MNKHLTYVNEHSLQVTEYSKIDSKDLIFDIETCYVDEKMLNKDYPQKDKKRKVWAFGLGATNTNNVIFGCDLDEAFYTFQMIGFEQAKKENIKKNKNKRVITLSVAVHNVAYEISYMQYWLTDNGFTYVNPSLQTNELGISRTIENFKPMTFSIVQTDNVYYGLEVNLPNTLELSDKDGHVNTFSVKVKFWDTLKIVPCSLDKAYKFCNNLDEMFYKLKEEFNYDKIREDNHILTDIERRYLYNDIRILKEVINDYFYNSLLKFEYNDEEIYISSNCKTSSSISFKSALEITYFEDRNKKKAFINQFEIEERQMLLSKMAREMENKSYEGGWTWYNPKIVNKVVKCNGSSFDINSSYPFQVESALLPYGMPTEYKGYVKPVEGEEVAIYNIGFDYFKPKSKEHELQMIRLGAKNFSDTDLPLLYRDKLNMVLMNGNSFIHTNIIDGRVIEIYRNGCENLCNYNMSITSVELEHLTKYYDFGYYENVEVDGFLFKEKDKIKFNGLKFGTSLVYKAEKGIFSNFVNHFYNLKSEIKHRIDKGEKLDAQYSAIKTILNSFYGKFGTRTTRTIDYLVKKDKIFTFDRGGKEKNLERVKKLKNEKRRNQILASGQYIETYESEPFYKPFASFVTAYARVYLQSMIIEGCGVENFLYSDTDSFYCSIPKEKVIEGLKKMGVEVHPNNLGAMDNEKNFKEFKTIGAKKYMLRTNDGKITCKCAGVPKDAQKILCNEGFEEFKLGKEVKGKLAQIKCDGGLDLVEVQYIIKDLSLRR
Sequence
>4152..5174, strand: +, evalue: 0.0, region: 1, locus tag: H3026_gp07, type: Head_protein, description: PP_00007;DNA encapsidation protein;phage;PHAGE_Clostr_phi24R_NC_019523
MGKFFEIKEFIEEYPNHLIHCVIGARGVGKSYSTKRLIIQEFLEYGKQALILRRYKNQAESMATTYFTDVLQKEFPTVEYELKGDMGFINGEPFCLFTGLNGNSLAKGSSFPNVYYIIYEEVMPEPGEKIIKDEYKKLESIIVTVDRFEDRIEVICVGNNTSYYNPIFDTLKLYPSTKPNRVVKNELMAIKTLETPKEFKEYALNSKVGKLTVMSGSSRYNIDNENISNDRFNVCSKKELWDTDKLEPVFKVRVDVDKVIKIWKCQSDTMFYYWVDNHNKGKCDEYFLDLDYQTDENKHISLCNKGLINRINFNNKVGAVFFNNAETKFYFNQIGLFFKK
Sequence
>5280..5861, strand: +, evalue: 4.55e-138, region: 1, locus tag: H3026_gp08, type: Hypothetical_protein, description: PP_00008;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MKKLSIFNLGNNVSSGVYFRLKDNREKAVITFLINNIDEVELDLVHPVKLADGREINVKCVAELDNDLKVIKDTCPLCGEGFKMSEKVAVNVYNHTTKSVQIWQLGKTLIEKLIFLAEKRPDLINHTYEVTRLGAKGDTNTSYEFEYLGASDKKVFEGLDLIKKNETVYYEVSNKDLENFLITGDEKIFERNK
Sequence
>5915..6151, strand: +, evalue: 1.52e-48, region: 1, locus tag: H3026_gp09, type: Hypothetical_protein, description: PP_00009;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MGENRELTELEIRKELALEKVNEKRLQLNRVVSFINQEEKEFPKSKEHDAVMFDTLLTSLGIEFKVTETKKRIIFQLA
Sequence
>6298..6552, strand: +, evalue: 8.44e-50, region: 1, locus tag: H3026_gp10, type: Hypothetical_protein, description: PP_00010;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MSKEMTLDDALLRIVELEETIENQNNVICTLNSEKETNSKEIEKLQKSNMELFLKVTSKPKEENNTEIKENNESKMDKLLKEWE
Sequence
>6557..7657, strand: +, evalue: 0.0, region: 1, locus tag: H3026_gp11, type: Head_protein, description: PP_00011;major capsid protein;phage;PHAGE_Clostr_CPS1_NC_048661
MAVKANKEIMEAFLEGATEETKKVLSQVDLADSRAVSNALFNYQVVKNEFINTLINKIFMTQIHSKVWKNPLKIFHGGMEEYGYTIEDMYVEASQKVGFKEHFNGGDDVKDIVGSLVPKVYTNYLSRNFADKYKITISDVQLKTAFRNEYGLSNLVNKLLEANLRGAYRDEYKYMKNMFFKYCSGLSNQDVGLSGSATQTQYIQDSQVIKLNDDASLVKNLCKSLKAMNDRLQFESDKYNSAKVMQFSSLNDCVFITTPEMKAEIDVDYLADVFNLSKSEVQQRIILMDELPTTIKSGDTGTNTHSGETCIGMLVDKDLLRFKDFVFETRYFNNPNNLSTNYFLHKQGLCGIVPFLNAIIYTKSTE
Sequence
>7670..8662, strand: +, evalue: 0.0, region: 1, locus tag: H3026_gp12, type: Head_protein, description: PP_00012;capsid and scaffold protein;phage;PHAGE_Clostr_CPS1_NC_048661
MEKLTNKEIYDKLISTMPKDLGNSFPSYEEALRLNLINIDMNSFIETICNKIGKMLYIEQHFSNPFNELFYGEMPFGYSIEELFLEDSTVQSLLDGDENEVFNSSLPRLNGLVANSRFDKKVKMTLSVERLKSAFLKEFGLYDLISKMLSNLKTSMSKDKYKEIEKALKEFAKGLDSNGENLNFKQVPYKEVASTNLIESIVKIVEEFTLPSDKYNPSKFNTQCLKSDIIIFVKPEIYAKLVSTDSVLLRGEYNIKSISDLPTDITNLSTNDTINPVALIMDKRLMPIMLNYNGLDRIDDPNSLTTNYYYYENYSLPVNTFSNFAILTSE
Sequence
>8655..10214, strand: +, evalue: 0.0, region: 1, locus tag: H3026_gp13, type: Membrane_protein, description: PP_00013;membrane protein;phage;PHAGE_Clostr_CPS1_NC_048661
MNKNVYFYSLPYVDPSYQNLFNFKSIGIQNDYFSSKVVWVGQYNIKVEPSRVSLVVDKPYGWFMENNINYISAYDTNMKNIYYFIDDFVYKTENSTLLVISVDVFQTYQFDFEILESFVDRCHVNRWNGDNPTNEYETEDISYGENVMLEYEKIADMGRGVVVTSTVPLGKVETNVGGGSDGTGSASGDIANGIISANGLLFVKQEEGFAEYGAYFNGESFKTGGYGVTENYQTKYYRQLEPFPVSEEKASQVTYDLLNNEFGIPVKNAMLKANINLSDIPIYQFDVWVSIAFNYGMGGLSGLNAWQMFLANPKDTKNIATAIKNLKANPNRRQREGALFESGVYPQRQILKYGQNGQIVGYTDGKGWLPSGKKDGKYVDNDAGTNWLIPTTGQISAYYPTYPSNNPHNGVDIATPTGTPVYASKDGTVIKRRELTTSYGKFLIIQHGDSQVVYAHNSELKVNEGDTVKQGQLIALSGNTGNSSGDHLHWEIRNEKGTVVANGVKTVNPMPNYKVGDKV
Sequence
>10211..11458, strand: +, evalue: 0.0, region: 1, locus tag: H3026_gp14, type: Fiber_protein, description: PP_00014;tail fibers protein;phage;PHAGE_Clostr_CPS1_NC_048661
MTITNKDYDTWDSKMYGLPYAVYSYYIDSTVAGENTAVIGASGDNVFSVVYTPFLDIADLELEEIPYDNKRFGNISEIRPEIKANPHVFRIKKLLKGSKFVGEFETYKVKKSVGGKRNWRNESKLYNYPYTYLMLSDGINDPMVLKPQFCSIPSCSVGIKLSVSDRCSYGIFVQTYKGDTDGMTEALVSNDALELPCSSSAYANWVATSKNQTAQSIQNTVNQTILNDKIAKNNMNLGIANSVVGGVASAFTGNVGGVIDSVFGSVGSYMDKKHTNMQSQLTRESAISSALATANDMRTTPNTLLSQGSNIIYGLRNGGQELRLYRYGLTERYYEKIGDYFAQFGYKQNKMMKININSRYYYNYIKTIGINIKTNKIPNNYLNILKGIFDNGTTIWHIDNDGVEIGNYSMDNREV
Sequence
>11462..12103, strand: +, evalue: 2.23e-158, region: 1, locus tag: H3026_gp15, type: Phage-like_protein, description: PP_00015;N-acetylmuramoyl-L-alanine amidase;phage;PHAGE_Clostr_CPS1_NC_048661
MKIGIRDGHSPNCKGAIALRDEQACMRILCREVIEVLEKHGHEVVYCGSNARTENGELSEGINKANSNNVDIFISLHMDVSKEHKANGTCSFVAKEARKSIRDIAQRLVDNFETLGLQNRGVRESNYREMREVNAPNIIFETMFCDNLHDINEVWSPTPYEKMALLIANAIDPTIKENELYRVVVQYFNSKEDAENCQQEIAKRWYCFVEGCN
Sequence
>12103..12276, strand: +, evalue: 1.64e-33, region: 1, locus tag: H3026_gp16, type: Hypothetical_protein, description: PP_00016;hypothetical protein;phage;PHAGE_Clostr_CPD2_NC_048738
MQEIINIINSVGFPIVACMIMFNQNSKLSNAISELNITLTKIQSDIDSLKYNQKQGE
Sequence
>12306..13175, strand: +, evalue: 0.0, region: 1, locus tag: H3026_gp17, type: Collar_protein, description: PP_00017;collar protein;phage;PHAGE_Clostr_CPS1_NC_048661
MGKRKSIISQNPNILLNENTICDNQTRLFLHYKLMACNRFKWENLPTGLESRHIEDFLFENGQCFFFKDDKLGLMCLPCHGLGDLNIYGDNIKLSIVSRNGKYQNILEDVKDGVKIRANDLCLPTSHFISHYAQKMDDIETVIKRNLKQQMKPFFVTATNNNLLSVKNIVNDVDNGKEVVILDKDLGEQGFDGFKMLQTGVIYLVDKLEDERKAVESELLSFLGLDNANTEKRERLLVDEVNANNEYIETNLDMEYKTRLLACKMINEKFGTNIKVTKVVDSFGGDENG
Sequence
>13168..13872, strand: +, evalue: 3.21e-169, region: 1, locus tag: H3026_gp18, type: Collar_protein, description: PP_00018;collar protein;phage;PHAGE_Clostr_CPS1_NC_048661
MAKYTLELRTLENNLFDFDYPYYEEEAKCYFEEKFINHYYFHEIGFETIARFKQQLKAYFLRVMPYYQQLYEIELRCKDIDFMLNKDLKETFIRELEENEINNLLTSQNEVGNTSTNINNNESNNSNNNTKESSLADGVSSSKIADGYLTNSSQSTDVYDSNSSTISKTDNKSNLNINNTGDKNNKQKEKTELISQGNIGITSSAELKEKWQSCLNNIDEQIILGARSLFMYVY
Sequence
>13884..14144, strand: +, evalue: 4.75e-53, region: 1, locus tag: H3026_gp19, type: Hypothetical_protein, description: PP_00019;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MIIIDRNKIIVNQFDLCILDLKLCEYNLKEGDKIEINIDGEITEQNYDNLDVQFDTDIKGIFDYSITIIQQGFARTKVIQNKIEVI
Sequence
>14144..15562, strand: +, evalue: 0.0, region: 1, locus tag: H3026_gp20, type: Hypothetical_protein, description: PP_00020;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MARLNYKEVLKGDVGATYEPHLTDESVLYWTNNGGLENPTPKNIRGKTGVTPNLQIGTVETLESDENAKVEIVGTAENPIINMGIPKGKEQDLNPYQTKNDDELLNDKSIVENINNNIVYNKNNQTDFNTIVNKKTNKLNTDFEDDTYYDKNGTKYSYSGYTVLSAKVEPLKQYDISCYSKFSMSPITLWNDENFIGYMGELNPSGESGLENQNIIITTPINCNKIKIQSTNWGKTDKHYIKEFIYYPNTFKYLKNLKWGAIGDSLTDANTLKEQTVKENYVNYVSESLGLRVDNLGVGGTGYWNGKNINKNFPKRTENLNSDYDIITIFGSFNDNFETTNYTLGNVSDKTEETLFGCMNKTLGNIYKNNPNVIVGIILPTPWGGWNLRHPSRLEKCKEYINALIEFANYNSLPILDLFHESNLRPWDSGFNSKYFLNADTVHPLSEAHKKFISPKVEDFIIKLIGGKKYDK
Sequence
>15552..17375, strand: +, evalue: 0.0, region: 1, locus tag: H3026_gp21, type: Hypothetical_protein, description: PP_00021;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MINKLNPIDLNCSIFTVYDYTGLSMQEILCQFFSKINELIDSQNQVIDLTKWLVGQGLKEEVAKQLNQWLIDGTLANIINETVFRDLNNKINSNIENIKNNKKEIDKLVTVWNNLKCFNVVDFGAIGDGETNNNKAFENAINSCVENNVRGLLIPTGKFYITEGINTKGVKIIGMGDPYIPFLEWEYTRPNSKLDEYKKYLNKCRGSIITSDKNINIFTNGLYAENIGIFGNRRALSQNGVGQMDGGFGNWIEIEKVKIHGCGNCGINAEYGLITPIINQCWLYQNGNNGIRIEKNKGTYTGETNALIIEKCFINRNESHGIYLDVKGRAYTIKNNDLEQNGEMSDPLRNNKGTDYNDIVYGCYMKVEGEGGFTSGSIDFSNNYSEETLGLLYLESPDNKICQGVKFESNMWRPYNQELYSNGLLLKGWIEGVKIGNNNMYGRHKVRIINANTYGIETDTDITNPVYKNKNISIEKHYDYNGTMVDFRNTGRVEKYSIENMIQSASYDGSTYTNVYLNKPSVPYELQEDGQGNKLIGTTFLTADGTSIGLVVDFSWTHGLFKIRKDRTSLIKTGNAKFMGNGGFTTINGGNTPVKIYVDHDNEIVIL
Sequence
>17389..17736, strand: -, evalue: 9.14e-75, region: 1, locus tag: H3026_gp22, type: Hypothetical_protein, description: PP_00022;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MKLKELEKIIDFEIKHNTLIENYSERYLFDCLKFIIKKSRTRNILVNNIKERMYMIDKLNIVLKIKIDELEKRITHEEMFFSNFSDTSSMMDLYRRKLDFCNDLLVDINDKKEGK
Sequence
>17740..17919, strand: -, evalue: 4.52e-35, region: 1, locus tag: H3026_gp23, type: Hypothetical_protein, description: PP_00023;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MDYLEKAKKYKYECKKSMYCKECSLESRCTKELGEAIPSLLPIARIVQRLIDIEEIRGD
Sequence
>18217..18573, strand: -, evalue: 4.79e-82, region: 1, locus tag: H3026_gp24, type: Hypothetical_protein, description: PP_00024;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MKKVFESAHALTRQFISAYGGDYRGQFIVTLRMLCAEKKNIKLRFERLIQEKKDRGITSINIYLKNGVSLYGDVACIEVEKTGVIFRDFLKVKYLKTTKRTSYHSLMKIDYRLVNWVS
Sequence
>18763..18918, strand: -, evalue: 1.06e-29, region: 1, locus tag: H3026_gp25, type: Hypothetical_protein, description: PP_00025;hypothetical protein;phage;PHAGE_Clostr_CPS1_NC_048661
MRQIKIVATMNLSCVEREEAVNIHLKELHDKEYAVKKVDYDNKSQNVYNII
gi|00000000|ref|NC_048661.1| Clostridium phage CPS1, complete genome. 19089, gc%: 28.26%
Download details as .txt file:detail.txt file_download
Bacterial, total 0 CDS
| # | CDS Position | BLAST Hit | E-Value | Sequence |
|---|
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Phage Genes
Bacterial Genes
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Phage Genes
Bacterial Genes
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GC Skew
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